Yep, Chrysalis store the keymap in eeprom and kaléidoscope compile it in the binary file, so you have to either :
- tell your sketch to mot use the eeprom layouts (you can search here or in the github issues)
- reset the eeprom (there is a
makecommand to do it, or use the «reset to factory» option from the Chrysalis firmware upgrade menu - don’t forget to export your layers as a backup, just in case…)
Happy hacking 