I’m using Chrysalis to configure individual key leds. However, some keys won’t light up and others light up without being configured with some color that was set for a different key.
This is an issue with the Colormap plugin (technically, with the LED-Palette-Theme plugin which Colormap is built on). It’s fixed in git, and the next release of Chrysalis (due tonight, in a few hours) will ship with updated firmware that has this bug fixed.
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Awesome! I’ll be watching github then 
I have also had the same problem with Chrysalis, and wondered if I was just missing something. Glad to hear it wasn’t only me, and looking forward to the fix!
Chrysalis 0.6.2 has been released, and the issue should be fixed in the firmware files shipped with it.